PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g21230.1.p
Common NameBRADI_4g21230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 215aa    MW: 24359.9 Da    PI: 10.311
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g21230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR152.22e-1688186290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                        Yn+YA+   Fs++ ++s+k k+ +       + sk  k+e+++++               +k+rr+++ ++t+Ckak++vk++ dg+wev+ 
  Bradi4g21230.1.p  88 HYNAYARVKCFSIKANTSRKPKNMDDAAG---QSSKVRKKESSSDDepvdanegplasqkVVKRRRRESIKETECKAKMTVKLK-DGRWEVIF 176
                       6****************999966664443...33444444444444455799******988899999999**************.******** PP

              FAR1  81 leleHnHela 90 
                       ++ eHnHel 
  Bradi4g21230.1.p 177 FVVEHNHELI 186
                       ********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-1488186IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MKIRKKKGRK STKKRAGLQY RGGSWKENHV SYAPFVWADE KVVIMQRLNV KPWDLNLEAP  60
LDDGIGGGAE PEPFLGMRFD TLAGAKEHYN AYARVKCFSI KANTSRKPKN MDDAAGQSSK  120
VRKKESSSDD EPVDANEGPL ASQKVVKRRR RESIKETECK AKMTVKLKDG RWEVIFFVVE  180
HNHELITKPS LTKYLLSHKN ISPEEEDFLR ATAI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229542.13e-65PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLI1IMA11e-159I1IMA1_BRADI; Uncharacterized protein
STRINGBRADI4G21230.11e-159(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP9528843
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.27e-11far-red elongated hypocotyls 3